STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_14097Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family. (530 aa)    
Predicted Functional Partners:
COLO4_35795
Asparagine-linked glycosylation protein 1-like protein.
   
 
 0.650
COLO4_25767
Glycosyl transferase, family 1.
   
 
 0.560
COLO4_23625
Glycosyl transferase, family 1.
   
 
 0.560
COLO4_00685
Tetrapyrrole methylase.
      
 0.487
COLO4_25079
Glycerophosphoryl diester phosphodiesterase.
      
 0.448
COLO4_29544
Glyco_tran_28_C domain-containing protein.
      
 0.443
COLO4_19842
Glyco_tran_28_C domain-containing protein.
      
 0.443
COLO4_31510
Plus-3.
      
 0.442
COLO4_20377
Glycoside hydrolase, family 63.
      
 0.439
COLO4_26001
Uncharacterized protein.
      
 0.433
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.