STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_13881Uncharacterized protein. (146 aa)    
Predicted Functional Partners:
COLO4_19984
Transcription factor TFIIE, alpha subunit.
      
 0.499
COLO4_34802
Uncharacterized protein.
      
 0.497
COLO4_33103
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue; Belongs to the peroxidase family.
      
 0.497
COLO4_32277
ABC transporter-like protein.
      
 0.497
COLO4_16183
COX assembly mitochondrial protein.
      
 0.497
COLO4_12167
mRNA splicing factor, Cwf18.
      
 0.448
COLO4_31081
Prefoldin beta-like protein.
   
  
 0.446
COLO4_26789
Uncharacterized protein.
      
 0.443
COLO4_27546
NADH:ubiquinone oxidoreductase, B18 subunit.
      
 0.441
COLO4_21837
Ubiquitin fusion degradation protein UFD1.
      
 0.430
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.