STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_13857Endonuclease/exonuclease/phosphatase. (423 aa)    
Predicted Functional Partners:
COLO4_12469
Uncharacterized protein.
   
 0.970
COLO4_18423
NOT2 / NOT3 / NOT5 family protein.
    
 0.968
COLO4_13621
Uncharacterized protein.
    
 0.968
COLO4_21829
Rcd1.
    
 0.940
COLO4_09899
Rcd1.
    
 0.940
COLO4_26510
Thioredoxin.
    
 0.929
COLO4_16726
Endonuclease/exonuclease/phosphatase.
  
  
  0.905
COLO4_16405
Endonuclease/exonuclease/phosphatase.
  
  
 
0.902
COLO4_37018
Zinc finger, RING/FYVE/PHD-type.
    
 0.879
COLO4_27092
Uncharacterized protein.
    
 0.879
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.