STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_13764No apical meristem (NAM) protein. (236 aa)    
Predicted Functional Partners:
COLO4_29180
Uncharacterized protein.
  
 
  0.636
COLO4_29898
TF-B3 domain-containing protein.
  
 
  0.625
COLO4_31007
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
  0.618
COLO4_35092
Plastocyanin-like protein.
  
 
  0.601
COLO4_35093
Plastocyanin-like protein.
  
 
  0.601
COLO4_20824
Aconitate hydratase 2, mitochondrial.
  
 
   0.594
COLO4_06057
PRT_C domain-containing protein.
  
 
  0.584
COLO4_36498
BURP domain-containing protein.
  
 
  0.583
COLO4_05248
Major intrinsic protein.
  
 
   0.583
COLO4_09030
Heme peroxidase, plant/fungal/bacterial; Belongs to the peroxidase family.
  
 
  0.572
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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