STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_13062DNA repair metallo-beta-lactamase. (422 aa)    
Predicted Functional Partners:
COLO4_17684
Zinc finger, CCCH-type.
    
 0.998
COLO4_14449
Armadillo-like helical.
   
 0.906
COLO4_17513
SAP domain-containing protein.
   
 0.890
COLO4_24315
WD_REPEATS_REGION domain-containing protein.
   
 0.884
COLO4_35342
Armadillo-type.
   
 0.872
COLO4_14531
Uncharacterized protein.
   
 0.872
COLO4_34619
Pre-mRNA polyadenylation factor Fip1.
    
 0.850
COLO4_18776
Pre-mRNA polyadenylation factor Fip1.
    
 0.850
COLO4_12548
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
    
 0.839
COLO4_07018
Ku domain-containing protein.
    
 0.839
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.