STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_12818Myb-like domain-containing protein. (162 aa)    
Predicted Functional Partners:
COLO4_09107
BHLH domain-containing protein.
   
 
 0.658
COLO4_13902
SANT domain-containing protein.
    
 0.647
COLO4_12045
Putative TRANSPARENT TESTA 1 protein.
  
 
 0.632
COLO4_09124
HMA domain-containing protein.
  
 
   0.589
COLO4_22650
OVATE domain-containing protein.
  
   0.570
COLO4_06303
Polyketide cyclase/dehydrase.
  
 
   0.570
COLO4_38258
Polyketide cyclase/dehydrase.
  
 
   0.567
COLO4_10685
Polyketide cyclase/dehydrase.
  
 
   0.567
COLO4_18120
E3 ubiquitin protein ligase DRIP2-like protein.
  
 
   0.560
COLO4_35092
Plastocyanin-like protein.
  
   0.556
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.