STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_12545Fatty acid hydroxylase; Belongs to the sterol desaturase family. (289 aa)    
Predicted Functional Partners:
COLO4_09354
Fatty acid hydroxylase; Belongs to the sterol desaturase family.
   
 0.997
COLO4_37598
Cytochrome P450; Belongs to the cytochrome P450 family.
   
 0.996
COLO4_21163
Reticulon-like protein.
   
 0.976
COLO4_10091
Reticulon-like protein.
   
 0.976
COLO4_04874
Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.
   
 0.939
COLO4_28253
Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family.
   
 0.934
COLO4_12599
dTDP-4-dehydrorhamnose reductase.
   
 0.927
COLO4_12311
3-beta hydroxysteroid dehydrogenase/isomerase.
   
 0.927
COLO4_35014
Squalene/phytoene synthase.
  
 0.924
COLO4_33787
Squalene/phytoene synthase.
  
 0.924
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.