Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_05729 | COLO4_12462 | A0A1R3KQ72 | A0A1R3K0U6 | GRIM-19 protein. | Transcription factor, SBP-box. | 0.621 |
COLO4_05729 | COLO4_25307 | A0A1R3KQ72 | A0A1R3I3K4 | GRIM-19 protein. | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. | 0.999 |
COLO4_05729 | COLO4_25931 | A0A1R3KQ72 | A0A1R3HZD9 | GRIM-19 protein. | Uncharacterized protein. | 0.999 |
COLO4_05729 | COLO4_27546 | A0A1R3KQ72 | A0A1R3HQB3 | GRIM-19 protein. | NADH:ubiquinone oxidoreductase, B18 subunit. | 0.999 |
COLO4_05729 | ndhJ | A0A1R3KQ72 | A0A1R3KZH0 | GRIM-19 protein. | NAD(P)H-quinone oxidoreductase subunit J, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. | 0.999 |
COLO4_09630 | COLO4_12462 | A0A1R3KBI0 | A0A1R3K0U6 | DNA polymerase. | Transcription factor, SBP-box. | 0.695 |
COLO4_09630 | COLO4_25841 | A0A1R3KBI0 | A0A1R3HZY1 | DNA polymerase. | ERCC4 domain-containing protein. | 0.790 |
COLO4_09630 | COLO4_33983 | A0A1R3KBI0 | A0A1R3GPC0 | DNA polymerase. | DNA polymerase alpha/epsilon, subunit B. | 0.999 |
COLO4_12462 | COLO4_05729 | A0A1R3K0U6 | A0A1R3KQ72 | Transcription factor, SBP-box. | GRIM-19 protein. | 0.621 |
COLO4_12462 | COLO4_09630 | A0A1R3K0U6 | A0A1R3KBI0 | Transcription factor, SBP-box. | DNA polymerase. | 0.695 |
COLO4_12462 | COLO4_13405 | A0A1R3K0U6 | A0A1R3JX42 | Transcription factor, SBP-box. | Sm domain-containing protein. | 0.616 |
COLO4_12462 | COLO4_22865 | A0A1R3K0U6 | A0A1R3IJG6 | Transcription factor, SBP-box. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.631 |
COLO4_12462 | COLO4_25307 | A0A1R3K0U6 | A0A1R3I3K4 | Transcription factor, SBP-box. | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. | 0.611 |
COLO4_12462 | COLO4_25841 | A0A1R3K0U6 | A0A1R3HZY1 | Transcription factor, SBP-box. | ERCC4 domain-containing protein. | 0.666 |
COLO4_12462 | COLO4_25931 | A0A1R3K0U6 | A0A1R3HZD9 | Transcription factor, SBP-box. | Uncharacterized protein. | 0.613 |
COLO4_12462 | COLO4_27546 | A0A1R3K0U6 | A0A1R3HQB3 | Transcription factor, SBP-box. | NADH:ubiquinone oxidoreductase, B18 subunit. | 0.619 |
COLO4_12462 | COLO4_33983 | A0A1R3K0U6 | A0A1R3GPC0 | Transcription factor, SBP-box. | DNA polymerase alpha/epsilon, subunit B. | 0.772 |
COLO4_12462 | ndhJ | A0A1R3K0U6 | A0A1R3KZH0 | Transcription factor, SBP-box. | NAD(P)H-quinone oxidoreductase subunit J, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. | 0.616 |
COLO4_13405 | COLO4_12462 | A0A1R3JX42 | A0A1R3K0U6 | Sm domain-containing protein. | Transcription factor, SBP-box. | 0.616 |
COLO4_13405 | COLO4_22865 | A0A1R3JX42 | A0A1R3IJG6 | Sm domain-containing protein. | Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. | 0.999 |
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