STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_12114Uncharacterized protein. (668 aa)    
Predicted Functional Partners:
COLO4_26067
Uncharacterized protein.
    
 
 0.732
COLO4_09888
Uncharacterized protein.
    
 
 0.732
COLO4_07788
Uncharacterized protein.
    
 
 0.732
COLO4_30749
Transcription factor TAFII-31.
    
  0.669
COLO4_29520
Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.
    
  0.558
COLO4_38606
Ribosomal protein L34.
    
   0.557
COLO4_24762
Ribosomal protein L29.
    
   0.557
COLO4_19031
Ribosomal protein L28.
    
   0.557
COLO4_18941
Transcription initiation factor TFIID subunit 5-like isoform 2.
    
  0.557
COLO4_18940
WD_REPEATS_REGION domain-containing protein.
    
  0.557
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.