Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_03902 | COLO4_09801 | A0A1R3KW01 | A0A1R3KAY6 | Putative Serine/threonine-protein kinase PBS1. | Zinc finger, PHD-type. | 0.540 |
COLO4_03902 | COLO4_12049 | A0A1R3KW01 | A0A1R3K2D1 | Putative Serine/threonine-protein kinase PBS1. | Methyltransferase. | 0.498 |
COLO4_03902 | COLO4_14858 | A0A1R3KW01 | A0A1R3JQR1 | Putative Serine/threonine-protein kinase PBS1. | Uncharacterized protein. | 0.455 |
COLO4_03902 | COLO4_15785 | A0A1R3KW01 | A0A1R3JL00 | Putative Serine/threonine-protein kinase PBS1. | Uncharacterized protein. | 0.448 |
COLO4_03902 | COLO4_24433 | A0A1R3KW01 | A0A1R3IA49 | Putative Serine/threonine-protein kinase PBS1. | Uncharacterized protein. | 0.507 |
COLO4_03902 | COLO4_25599 | A0A1R3KW01 | A0A1R3I141 | Putative Serine/threonine-protein kinase PBS1. | Zinc finger, RING-CH-type. | 0.537 |
COLO4_03902 | COLO4_30321 | A0A1R3KW01 | A0A1R3H9B8 | Putative Serine/threonine-protein kinase PBS1. | Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. | 0.420 |
COLO4_09801 | COLO4_03902 | A0A1R3KAY6 | A0A1R3KW01 | Zinc finger, PHD-type. | Putative Serine/threonine-protein kinase PBS1. | 0.540 |
COLO4_09801 | COLO4_12049 | A0A1R3KAY6 | A0A1R3K2D1 | Zinc finger, PHD-type. | Methyltransferase. | 0.500 |
COLO4_09801 | COLO4_14858 | A0A1R3KAY6 | A0A1R3JQR1 | Zinc finger, PHD-type. | Uncharacterized protein. | 0.456 |
COLO4_09801 | COLO4_15785 | A0A1R3KAY6 | A0A1R3JL00 | Zinc finger, PHD-type. | Uncharacterized protein. | 0.454 |
COLO4_09801 | COLO4_24433 | A0A1R3KAY6 | A0A1R3IA49 | Zinc finger, PHD-type. | Uncharacterized protein. | 0.516 |
COLO4_09801 | COLO4_25599 | A0A1R3KAY6 | A0A1R3I141 | Zinc finger, PHD-type. | Zinc finger, RING-CH-type. | 0.523 |
COLO4_09801 | COLO4_30321 | A0A1R3KAY6 | A0A1R3H9B8 | Zinc finger, PHD-type. | Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. | 0.459 |
COLO4_12049 | COLO4_03902 | A0A1R3K2D1 | A0A1R3KW01 | Methyltransferase. | Putative Serine/threonine-protein kinase PBS1. | 0.498 |
COLO4_12049 | COLO4_09801 | A0A1R3K2D1 | A0A1R3KAY6 | Methyltransferase. | Zinc finger, PHD-type. | 0.500 |
COLO4_12049 | COLO4_14858 | A0A1R3K2D1 | A0A1R3JQR1 | Methyltransferase. | Uncharacterized protein. | 0.528 |
COLO4_12049 | COLO4_15785 | A0A1R3K2D1 | A0A1R3JL00 | Methyltransferase. | Uncharacterized protein. | 0.508 |
COLO4_12049 | COLO4_17820 | A0A1R3K2D1 | A0A1R3JBF0 | Methyltransferase. | Uncharacterized protein. | 0.598 |
COLO4_12049 | COLO4_18136 | A0A1R3K2D1 | A0A1R3JA69 | Methyltransferase. | BRX domain-containing protein. | 0.504 |
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