STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_11556N-acetyltransferase domain-containing protein. (415 aa)    
Predicted Functional Partners:
COLO4_31138
Auxin responsive SAUR protein.
  
   
 0.611
COLO4_37943
No apical meristem (NAM) protein.
  
 
   0.531
COLO4_08863
Uncharacterized protein.
  
     0.528
COLO4_35041
Uncharacterized protein.
  
     0.527
COLO4_26821
Uncharacterized protein.
  
     0.526
COLO4_33581
Phosphoenolpyruvate carboxylase 2-like protein.
  
     0.523
COLO4_31516
Uncharacterized protein.
  
     0.522
COLO4_31075
Uncharacterized protein.
  
     0.522
COLO4_31174
Kelch-like motif-containing protein.
  
     0.520
COLO4_30384
Late embryogenesis abundant protein, LEA-14.
  
     0.520
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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