STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_10187Aluminum-activated malate transporter. (274 aa)    
Predicted Functional Partners:
COLO4_30749
Transcription factor TAFII-31.
   
 
 0.795
COLO4_11080
SAGA-associated factor 11.
    
 
 0.790
COLO4_29175
SGF29 C-terminal domain-containing protein.
    
 
 0.721
COLO4_23013
Uncharacterized protein.
    
 
 0.721
COLO4_30763
Transcription initiation factor TFIID.
    
 
 0.712
COLO4_29776
Transcription initiation factor TFIID.
    
 
 0.712
COLO4_26870
Splicing factor subunit; Belongs to the SF3B5 family.
    
   0.708
COLO4_27370
BTP domain-containing protein.
   
 
 0.684
COLO4_27723
Transcription initiation factor TFIID, 23-30kDa subunit.
    
 
 0.675
COLO4_21113
Transcription initiation factor TFIID, 23-30kDa subunit.
    
 
 0.675
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.