STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_10060Uncharacterized protein. (210 aa)    
Predicted Functional Partners:
COLO4_38543
Mitochodrial transcription termination factor-related protein.
  
     0.520
COLO4_05825
E3 ubiquitin-protein ligase RHF1A.
  
     0.518
COLO4_26795
Uncharacterized protein.
  
     0.516
COLO4_19881
Uncharacterized protein.
  
     0.515
COLO4_14442
Methyltransferase FkbM.
  
    0.511
COLO4_19497
Glucosamine 6-phosphate N-acetyltransferase.
  
     0.510
COLO4_11163
Methyltransferase FkbM.
  
    0.508
COLO4_06026
Uncharacterized protein.
  
     0.497
COLO4_25171
L-ascorbate oxidase.
  
     0.493
COLO4_07938
Receptor-like serine/threonine-protein kinase.
  
     0.492
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.