STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_09965Nucleotide-binding, alpha-beta plait. (153 aa)    
Predicted Functional Partners:
COLO4_29287
Ribosomal protein L37, mitochondrial.
   
 
 0.995
COLO4_13732
Ribosomal protein L13.
   
 
 0.994
COLO4_12008
Ribosomal protein L27/L41, mitochondrial.
   
 
 0.991
COLO4_24762
Ribosomal protein L29.
   
 
 0.990
COLO4_18186
Ribosomal protein S16.
   
 
 0.988
COLO4_32207
Ribosomal protein L19.
   
 
 0.986
COLO4_21685
Ribosomal protein L19.
   
 
 0.984
COLO4_13264
Ribosomal protein L27.
   
 
 0.983
COLO4_26811
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.982
COLO4_29520
Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.979
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.