STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_09479TF-B3 domain-containing protein. (346 aa)    
Predicted Functional Partners:
COLO4_31440
Squamosa promoter-binding-like protein.
  
     0.454
COLO4_22534
Transcription factor, SBP-box.
  
     0.453
COLO4_12541
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
  
     0.450
COLO4_31627
Uncharacterized protein.
      
 0.435
COLO4_06641
Uncharacterized protein.
      
 0.430
COLO4_34753
HPt domain-containing protein.
  
     0.424
COLO4_36140
Transcription factor, SBP-box.
  
     0.422
COLO4_19174
Putative Omega-3 fatty acid desaturase, endoplasmic reticulum.
  
     0.417
COLO4_05957
Transcription factor, SBP-box.
  
     0.411
COLO4_28438
Uncharacterized protein.
  
     0.409
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.