Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_09451 | COLO4_11135 | A0A1R3KC23 | A0A1R3K5P3 | F-box domain-containing protein. | UDP-glucuronosyl/UDP-glucosyltransferase. | 0.435 |
COLO4_09451 | COLO4_14095 | A0A1R3KC23 | A0A1R3JTJ3 | F-box domain-containing protein. | Uncharacterized protein. | 0.443 |
COLO4_09451 | COLO4_22637 | A0A1R3KC23 | A0A1R3IKT2 | F-box domain-containing protein. | No apical meristem (NAM) protein. | 0.481 |
COLO4_09451 | COLO4_26172 | A0A1R3KC23 | A0A1R3HYI9 | F-box domain-containing protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.693 |
COLO4_09451 | COLO4_26340 | A0A1R3KC23 | A0A1R3HXP1 | F-box domain-containing protein. | Uncharacterized protein. | 0.498 |
COLO4_09451 | COLO4_29100 | A0A1R3KC23 | A0A1R3HGC9 | F-box domain-containing protein. | Oleosin. | 0.429 |
COLO4_09451 | COLO4_31129 | A0A1R3KC23 | A0A1R3H5I2 | F-box domain-containing protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.464 |
COLO4_09451 | COLO4_31801 | A0A1R3KC23 | A0A1R3H378 | F-box domain-containing protein. | F-box domain-containing protein. | 0.437 |
COLO4_09451 | COLO4_31893 | A0A1R3KC23 | A0A1R3H2W1 | F-box domain-containing protein. | E3 ubiquitin-protein ligase. | 0.439 |
COLO4_09451 | COLO4_36204 | A0A1R3KC23 | A0A1R3GAH1 | F-box domain-containing protein. | Uncharacterized protein. | 0.441 |
COLO4_11135 | COLO4_09451 | A0A1R3K5P3 | A0A1R3KC23 | UDP-glucuronosyl/UDP-glucosyltransferase. | F-box domain-containing protein. | 0.435 |
COLO4_11135 | COLO4_14095 | A0A1R3K5P3 | A0A1R3JTJ3 | UDP-glucuronosyl/UDP-glucosyltransferase. | Uncharacterized protein. | 0.428 |
COLO4_11135 | COLO4_26340 | A0A1R3K5P3 | A0A1R3HXP1 | UDP-glucuronosyl/UDP-glucosyltransferase. | Uncharacterized protein. | 0.424 |
COLO4_14095 | COLO4_09451 | A0A1R3JTJ3 | A0A1R3KC23 | Uncharacterized protein. | F-box domain-containing protein. | 0.443 |
COLO4_14095 | COLO4_11135 | A0A1R3JTJ3 | A0A1R3K5P3 | Uncharacterized protein. | UDP-glucuronosyl/UDP-glucosyltransferase. | 0.428 |
COLO4_14095 | COLO4_26340 | A0A1R3JTJ3 | A0A1R3HXP1 | Uncharacterized protein. | Uncharacterized protein. | 0.416 |
COLO4_14095 | COLO4_29100 | A0A1R3JTJ3 | A0A1R3HGC9 | Uncharacterized protein. | Oleosin. | 0.423 |
COLO4_14095 | COLO4_31801 | A0A1R3JTJ3 | A0A1R3H378 | Uncharacterized protein. | F-box domain-containing protein. | 0.461 |
COLO4_22637 | COLO4_09451 | A0A1R3IKT2 | A0A1R3KC23 | No apical meristem (NAM) protein. | F-box domain-containing protein. | 0.481 |
COLO4_22637 | COLO4_26172 | A0A1R3IKT2 | A0A1R3HYI9 | No apical meristem (NAM) protein. | Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | 0.503 |
page 1 of 2