Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_09125 | COLO4_14869 | A0A1R3KD35 | A0A1R3JQQ2 | Phenazine biosynthesis PhzF protein. | Diaminopimelate epimerase, DapF. | 0.698 |
COLO4_09125 | COLO4_15291 | A0A1R3KD35 | A0A1R3JNM1 | Phenazine biosynthesis PhzF protein. | Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.665 |
COLO4_09125 | COLO4_15293 | A0A1R3KD35 | A0A1R3JNP1 | Phenazine biosynthesis PhzF protein. | Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.665 |
COLO4_09125 | COLO4_15294 | A0A1R3KD35 | A0A1R3JNE8 | Phenazine biosynthesis PhzF protein. | Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.665 |
COLO4_09125 | COLO4_17049 | A0A1R3KD35 | A0A1R3JEF0 | Phenazine biosynthesis PhzF protein. | Peptidase M20. | 0.637 |
COLO4_09125 | COLO4_24079 | A0A1R3KD35 | A0A1R3ID48 | Phenazine biosynthesis PhzF protein. | Uncharacterized protein. | 0.637 |
COLO4_09125 | COLO4_24641 | A0A1R3KD35 | A0A1R3I8L1 | Phenazine biosynthesis PhzF protein. | Ornithine/DAP/Arg decarboxylase. | 0.665 |
COLO4_09125 | COLO4_25976 | A0A1R3KD35 | A0A1R3HZ39 | Phenazine biosynthesis PhzF protein. | Ornithine/DAP/Arg decarboxylase. | 0.665 |
COLO4_09125 | COLO4_26076 | A0A1R3KD35 | A0A1R3HYV3 | Phenazine biosynthesis PhzF protein. | Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.665 |
COLO4_09125 | COLO4_33139 | A0A1R3KD35 | A0A1R3GW33 | Phenazine biosynthesis PhzF protein. | Uncharacterized protein. | 0.637 |
COLO4_14869 | COLO4_09125 | A0A1R3JQQ2 | A0A1R3KD35 | Diaminopimelate epimerase, DapF. | Phenazine biosynthesis PhzF protein. | 0.698 |
COLO4_14869 | COLO4_15291 | A0A1R3JQQ2 | A0A1R3JNM1 | Diaminopimelate epimerase, DapF. | Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.850 |
COLO4_14869 | COLO4_15293 | A0A1R3JQQ2 | A0A1R3JNP1 | Diaminopimelate epimerase, DapF. | Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.850 |
COLO4_14869 | COLO4_15294 | A0A1R3JQQ2 | A0A1R3JNE8 | Diaminopimelate epimerase, DapF. | Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.850 |
COLO4_14869 | COLO4_17049 | A0A1R3JQQ2 | A0A1R3JEF0 | Diaminopimelate epimerase, DapF. | Peptidase M20. | 0.849 |
COLO4_14869 | COLO4_24079 | A0A1R3JQQ2 | A0A1R3ID48 | Diaminopimelate epimerase, DapF. | Uncharacterized protein. | 0.849 |
COLO4_14869 | COLO4_24641 | A0A1R3JQQ2 | A0A1R3I8L1 | Diaminopimelate epimerase, DapF. | Ornithine/DAP/Arg decarboxylase. | 0.850 |
COLO4_14869 | COLO4_25976 | A0A1R3JQQ2 | A0A1R3HZ39 | Diaminopimelate epimerase, DapF. | Ornithine/DAP/Arg decarboxylase. | 0.954 |
COLO4_14869 | COLO4_26076 | A0A1R3JQQ2 | A0A1R3HYV3 | Diaminopimelate epimerase, DapF. | Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.850 |
COLO4_14869 | COLO4_33139 | A0A1R3JQQ2 | A0A1R3GW33 | Diaminopimelate epimerase, DapF. | Uncharacterized protein. | 0.849 |
page 1 of 5