STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_07848Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (335 aa)    
Predicted Functional Partners:
COLO4_18232
AMP_N domain-containing protein.
    
   0.655
COLO4_16102
Uncharacterized protein; Belongs to the cyclin family.
   
  
 0.510
COLO4_12735
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
  
   
 0.497
COLO4_07072
Protein kinase domain-containing protein.
  
   
0.476
COLO4_11045
SAP domain-containing protein.
      
 0.459
COLO4_23038
Cystathionine beta-synthase, core.
      
 0.441
COLO4_23340
Photolyase/cryptochrome alpha/beta domain-containing protein.
      
 0.435
COLO4_14152
Photolyase/cryptochrome alpha/beta domain-containing protein.
      
 0.434
COLO4_37769
Uncharacterized protein.
      
 0.429
COLO4_09064
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
      
 0.424
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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