Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_07725 | COLO4_07946 | A0A1R3KIV4 | A0A1R3KI12 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | CCAAT-binding factor. | 0.978 |
COLO4_07725 | COLO4_09433 | A0A1R3KIV4 | A0A1R3KC64 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Anticodon-binding protein. | 0.979 |
COLO4_07725 | COLO4_13628 | A0A1R3KIV4 | A0A1R3JVL1 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Nop domain-containing protein. | 0.979 |
COLO4_07725 | COLO4_14179 | A0A1R3KIV4 | A0A1R3JTN5 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Uncharacterized protein. | 0.987 |
COLO4_07725 | COLO4_17896 | A0A1R3KIV4 | A0A1R3JB56 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Putative mRNA turnover protein 4 mrt4. | 0.987 |
COLO4_07725 | COLO4_29105 | A0A1R3KIV4 | A0A1R3HGI1 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | 0.978 |
COLO4_07725 | COLO4_29815 | A0A1R3KIV4 | A0A1R3HCY8 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Brix domain-containing protein. | 0.986 |
COLO4_07725 | COLO4_30170 | A0A1R3KIV4 | A0A1R3HAQ2 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosomal protein L24e-related protein. | 0.977 |
COLO4_07725 | COLO4_33567 | A0A1R3KIV4 | A0A1R3GSP4 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. | 0.988 |
COLO4_07725 | COLO4_33895 | A0A1R3KIV4 | A0A1R3GQ77 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | RRM domain-containing protein. | 0.975 |
COLO4_07946 | COLO4_07725 | A0A1R3KI12 | A0A1R3KIV4 | CCAAT-binding factor. | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.978 |
COLO4_07946 | COLO4_09433 | A0A1R3KI12 | A0A1R3KC64 | CCAAT-binding factor. | Anticodon-binding protein. | 0.997 |
COLO4_07946 | COLO4_13628 | A0A1R3KI12 | A0A1R3JVL1 | CCAAT-binding factor. | Nop domain-containing protein. | 0.972 |
COLO4_07946 | COLO4_14179 | A0A1R3KI12 | A0A1R3JTN5 | CCAAT-binding factor. | Uncharacterized protein. | 0.994 |
COLO4_07946 | COLO4_17896 | A0A1R3KI12 | A0A1R3JB56 | CCAAT-binding factor. | Putative mRNA turnover protein 4 mrt4. | 0.989 |
COLO4_07946 | COLO4_29105 | A0A1R3KI12 | A0A1R3HGI1 | CCAAT-binding factor. | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | 0.988 |
COLO4_07946 | COLO4_29815 | A0A1R3KI12 | A0A1R3HCY8 | CCAAT-binding factor. | Brix domain-containing protein. | 0.997 |
COLO4_07946 | COLO4_30170 | A0A1R3KI12 | A0A1R3HAQ2 | CCAAT-binding factor. | Ribosomal protein L24e-related protein. | 0.987 |
COLO4_07946 | COLO4_33567 | A0A1R3KI12 | A0A1R3GSP4 | CCAAT-binding factor. | Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. | 0.998 |
COLO4_07946 | COLO4_33895 | A0A1R3KI12 | A0A1R3GQ77 | CCAAT-binding factor. | RRM domain-containing protein. | 0.991 |
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