STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_06938WD_REPEATS_REGION domain-containing protein. (559 aa)    
Predicted Functional Partners:
COLO4_15958
Uncharacterized protein.
   
 0.981
COLO4_15470
Uncharacterized protein.
   
 0.981
COLO4_07530
Pre-mRNA-splicing factor SPF27.
   
 0.981
COLO4_06952
Armadillo-like helical.
   
 0.975
COLO4_09698
Pre-mRNA-splicing factor Cwf15/Cwc15.
   
 0.970
COLO4_07729
Pre-mRNA-splicing factor Cwf15/Cwc15.
   
 0.970
COLO4_11261
Matrin-type domain-containing protein.
   
 
 0.936
COLO4_18047
Nuclear cap-binding protein subunit 2.
   
 
 0.933
COLO4_09527
WD_REPEATS_REGION domain-containing protein.
  
 
 
 0.923
COLO4_34776
SKIP_SNW domain-containing protein.
   
 
 0.915
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.