STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_06864Histone deacetylase superfamily. (633 aa)    
Predicted Functional Partners:
COLO4_26067
Uncharacterized protein.
   
 0.925
COLO4_09888
Uncharacterized protein.
   
 0.925
COLO4_07788
Uncharacterized protein.
   
 0.925
COLO4_20737
Retinoblastoma-associated protein, B-box.
    
 0.895
COLO4_30660
WD_REPEATS_REGION domain-containing protein.
   
 0.884
COLO4_18197
WD_REPEATS_REGION domain-containing protein.
   
 0.884
COLO4_29989
Integrase, catalytic core.
    
 0.875
COLO4_21821
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.875
COLO4_16264
Integrase, catalytic core.
    
 0.875
COLO4_19347
WD_REPEATS_REGION domain-containing protein.
   
 0.870
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.