STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_06167Flavin-containing monooxygenase. (462 aa)    
Predicted Functional Partners:
COLO4_08574
Amidase.
    
 0.618
COLO4_04375
Amidase.
    
 0.618
COLO4_08752
Cytochrome P450; Belongs to the cytochrome P450 family.
   
 0.605
COLO4_37249
Mg-por_mtran_C domain-containing protein.
     
 0.573
COQ3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
     
 0.573
COLO4_07840
Zinc finger, LSD1-type.
      
 0.503
COLO4_05417
Peptidase C14, caspase catalytic.
      
 0.501
COLO4_37106
NADPH:adrenodoxin oxidoreductase, mitochondrial.
     
 0.489
COLO4_38386
Alpha/beta hydrolase-3.
  
 
 0.481
COLO4_32677
Alpha/beta hydrolase-3.
  
 
 0.481
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.