STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_06133TRAF-like family protein. (284 aa)    
Predicted Functional Partners:
COLO4_11455
Ubiquitin-conjugating enzyme, E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.625
COLO4_10131
Ubiquitin-conjugating enzyme, E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.625
COLO4_23165
Ubiquitin.
    
  0.521
COLO4_38370
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.495
COLO4_35078
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.495
COLO4_30016
Cullin domain-containing protein; Belongs to the cullin family.
   
 0.495
COLO4_29352
Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.
   
 0.495
COLO4_29351
Cullin domain-containing protein; Belongs to the cullin family.
   
 0.495
COLO4_22989
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.495
COLO4_18456
Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.
   
 0.495
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.