STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_05775Dynein light chain. (170 aa)    
Predicted Functional Partners:
COLO4_09551
C2H2-type domain-containing protein.
    
 
 0.756
COLO4_05242
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.719
COLO4_06293
Beclin family.
    
 0.681
COLO4_24195
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
     
 0.665
COLO4_35452
PMR5N domain-containing protein.
    
 0.635
COLO4_34337
PMR5N domain-containing protein.
    
 0.635
COLO4_34338
PC-Esterase.
    
 0.635
COLO4_29663
PMR5N domain-containing protein.
    
 0.635
COLO4_29339
PMR5N domain-containing protein.
    
 0.635
COLO4_26628
PMR5N domain-containing protein.
    
 0.635
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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