Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_05528 | COLO4_07024 | A0A1R3KQQ3 | A0A1R3KL48 | Nucleolar complex protein 2. | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | 0.989 |
COLO4_05528 | COLO4_07946 | A0A1R3KQQ3 | A0A1R3KI12 | Nucleolar complex protein 2. | CCAAT-binding factor. | 0.995 |
COLO4_05528 | COLO4_09433 | A0A1R3KQQ3 | A0A1R3KC64 | Nucleolar complex protein 2. | Anticodon-binding protein. | 0.995 |
COLO4_05528 | COLO4_14179 | A0A1R3KQQ3 | A0A1R3JTN5 | Nucleolar complex protein 2. | Uncharacterized protein. | 0.995 |
COLO4_05528 | COLO4_17896 | A0A1R3KQQ3 | A0A1R3JB56 | Nucleolar complex protein 2. | Putative mRNA turnover protein 4 mrt4. | 0.993 |
COLO4_05528 | COLO4_29105 | A0A1R3KQQ3 | A0A1R3HGI1 | Nucleolar complex protein 2. | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | 0.996 |
COLO4_05528 | COLO4_29434 | A0A1R3KQQ3 | A0A1R3HEK9 | Nucleolar complex protein 2. | Uncharacterized protein. | 0.995 |
COLO4_05528 | COLO4_29815 | A0A1R3KQQ3 | A0A1R3HCY8 | Nucleolar complex protein 2. | Brix domain-containing protein. | 0.995 |
COLO4_05528 | COLO4_33567 | A0A1R3KQQ3 | A0A1R3GSP4 | Nucleolar complex protein 2. | Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. | 0.996 |
COLO4_05528 | COLO4_35816 | A0A1R3KQQ3 | A0A1R3GDA1 | Nucleolar complex protein 2. | Ribosomal protein L1. | 0.989 |
COLO4_07024 | COLO4_05528 | A0A1R3KL48 | A0A1R3KQQ3 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Nucleolar complex protein 2. | 0.989 |
COLO4_07024 | COLO4_07946 | A0A1R3KL48 | A0A1R3KI12 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | CCAAT-binding factor. | 0.993 |
COLO4_07024 | COLO4_09433 | A0A1R3KL48 | A0A1R3KC64 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Anticodon-binding protein. | 0.998 |
COLO4_07024 | COLO4_14179 | A0A1R3KL48 | A0A1R3JTN5 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Uncharacterized protein. | 0.997 |
COLO4_07024 | COLO4_17896 | A0A1R3KL48 | A0A1R3JB56 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Putative mRNA turnover protein 4 mrt4. | 0.996 |
COLO4_07024 | COLO4_29105 | A0A1R3KL48 | A0A1R3HGI1 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. | 0.999 |
COLO4_07024 | COLO4_29434 | A0A1R3KL48 | A0A1R3HEK9 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Uncharacterized protein. | 0.862 |
COLO4_07024 | COLO4_29815 | A0A1R3KL48 | A0A1R3HCY8 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Brix domain-containing protein. | 0.997 |
COLO4_07024 | COLO4_33567 | A0A1R3KL48 | A0A1R3GSP4 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. | 0.999 |
COLO4_07024 | COLO4_35816 | A0A1R3KL48 | A0A1R3GDA1 | Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. | Ribosomal protein L1. | 0.996 |
page 1 of 6