Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_00168 | COLO4_05172 | A0A1R3L4H7 | A0A1R3KRR1 | Uncharacterized protein. | CDT1 domain-containing protein. | 0.999 |
COLO4_00168 | COLO4_12725 | A0A1R3L4H7 | A0A1R3JZZ0 | Uncharacterized protein. | Origin recognition complex, subunit 5. | 0.994 |
COLO4_00168 | COLO4_24889 | A0A1R3L4H7 | A0A1R3I617 | Uncharacterized protein. | Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. | 0.996 |
COLO4_00168 | COLO4_24890 | A0A1R3L4H7 | A0A1R3I5X3 | Uncharacterized protein. | Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. | 0.996 |
COLO4_00168 | COLO4_25023 | A0A1R3L4H7 | A0A1R3I5A8 | Uncharacterized protein. | DNA helicase; Belongs to the MCM family. | 0.990 |
COLO4_00168 | COLO4_26009 | A0A1R3L4H7 | A0A1R3HYZ7 | Uncharacterized protein. | DNA helicase; Belongs to the MCM family. | 0.997 |
COLO4_00168 | COLO4_27084 | A0A1R3L4H7 | A0A1R3HTE9 | Uncharacterized protein. | Mini-chromosome maintenance, DNA-dependent ATPase; Belongs to the MCM family. | 0.990 |
COLO4_00168 | COLO4_38291 | A0A1R3L4H7 | A0A1R3FVX4 | Uncharacterized protein. | DNA helicase; Belongs to the MCM family. | 0.996 |
COLO4_00168 | MCM7 | A0A1R3L4H7 | A0A1R3IHR0 | Uncharacterized protein. | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | 0.996 |
COLO4_05172 | COLO4_00168 | A0A1R3KRR1 | A0A1R3L4H7 | CDT1 domain-containing protein. | Uncharacterized protein. | 0.999 |
COLO4_05172 | COLO4_12725 | A0A1R3KRR1 | A0A1R3JZZ0 | CDT1 domain-containing protein. | Origin recognition complex, subunit 5. | 0.999 |
COLO4_05172 | COLO4_19124 | A0A1R3KRR1 | A0A1R3J6L3 | CDT1 domain-containing protein. | Uncharacterized protein. | 0.999 |
COLO4_05172 | COLO4_24889 | A0A1R3KRR1 | A0A1R3I617 | CDT1 domain-containing protein. | Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. | 0.998 |
COLO4_05172 | COLO4_24890 | A0A1R3KRR1 | A0A1R3I5X3 | CDT1 domain-containing protein. | Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. | 0.998 |
COLO4_05172 | COLO4_25023 | A0A1R3KRR1 | A0A1R3I5A8 | CDT1 domain-containing protein. | DNA helicase; Belongs to the MCM family. | 0.998 |
COLO4_05172 | COLO4_26009 | A0A1R3KRR1 | A0A1R3HYZ7 | CDT1 domain-containing protein. | DNA helicase; Belongs to the MCM family. | 0.999 |
COLO4_05172 | COLO4_27084 | A0A1R3KRR1 | A0A1R3HTE9 | CDT1 domain-containing protein. | Mini-chromosome maintenance, DNA-dependent ATPase; Belongs to the MCM family. | 0.998 |
COLO4_05172 | COLO4_38291 | A0A1R3KRR1 | A0A1R3FVX4 | CDT1 domain-containing protein. | DNA helicase; Belongs to the MCM family. | 0.999 |
COLO4_05172 | MCM7 | A0A1R3KRR1 | A0A1R3IHR0 | CDT1 domain-containing protein. | DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] | 0.999 |
COLO4_12725 | COLO4_00168 | A0A1R3JZZ0 | A0A1R3L4H7 | Origin recognition complex, subunit 5. | Uncharacterized protein. | 0.994 |
page 1 of 6