STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_05160AAA domain-containing protein. (479 aa)    
Predicted Functional Partners:
COLO4_18186
Ribosomal protein S16.
  
 
 0.644
COLO4_13264
Ribosomal protein L27.
  
 
 0.643
COLO4_26388
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.636
COLO4_35113
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.628
COLO4_02961
50S ribosomal protein.
    
   0.609
COLO4_29445
Ribosomal protein S5/S7; Belongs to the universal ribosomal protein uS7 family.
   
   0.603
COLO4_29285
Prohibitin.
   
 0.509
COLO4_32207
Ribosomal protein L19.
  
   0.508
COLO4_21685
Ribosomal protein L19.
  
   0.508
COLO4_09086
Ribosome recycling factor.
  
 
 0.508
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.