STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_05089Small ubiquitin-related modifier, SUMO. (110 aa)    
Predicted Functional Partners:
COLO4_06539
UBA/THIF-type NAD/FAD binding protein.
   
 0.968
COLO4_19083
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.963
COLO4_25994
SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.
   
 0.961
COLO4_11455
Ubiquitin-conjugating enzyme, E2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.931
COLO4_10131
Ubiquitin-conjugating enzyme, E2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.931
COLO4_09095
Leucine-rich repeat, ribonuclease inhibitor subtype.
    
 0.898
COLO4_06202
Leucine-rich repeat, ribonuclease inhibitor subtype.
    
 0.898
COLO4_23720
Zinc finger, PHD-type.
    
 0.859
COLO4_08355
Zinc finger, MIZ-type.
    
 0.859
COLO4_05189
Uncharacterized protein.
    
 0.859
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.