STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_04114Zinc finger, RING/FYVE/PHD-type. (110 aa)    
Predicted Functional Partners:
COLO4_38399
Uncharacterized protein.
    
 0.999
COLO4_31575
WD_REPEATS_REGION domain-containing protein.
    
 0.999
COLO4_27998
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.999
COLO4_25753
Anaphase-promoting complex subunit 1.
    
 0.999
COLO4_22055
DOC domain-containing protein.
    
 0.999
COLO4_17530
Tetratricopeptide-like helical.
    
 0.999
COLO4_22768
Ubiquitin-conjugating enzyme, E2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.994
COLO4_19780
Cdc23.
    
 0.992
COLO4_19778
Tetratricopeptide-like helical.
    
 0.989
COLO4_13910
Tetratricopeptide-like helical.
    
 0.989
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.