STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_04116Pseudouridine-5'-phosphate glycosidase. (149 aa)    
Predicted Functional Partners:
COLO4_29777
IU_nuc_hydro domain-containing protein.
  
 
  0.901
COLO4_33098
Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
   
 
  0.893
COLO4_18213
CMP/dCMP deaminase, zinc-binding protein.
  
 
  0.874
COLO4_14757
Vacuolar import/degradation protein Vid24.
  
 
  0.864
COLO4_13558
Uncharacterized protein.
  
 
  0.864
COLO4_34814
PNP_UDP_1 domain-containing protein.
    
  0.739
COLO4_20794
PNP_UDP_1 domain-containing protein.
    
  0.739
COLO4_18669
PNP_UDP_1 domain-containing protein.
    
  0.739
COLO4_18670
PNP_UDP_1 domain-containing protein.
    
  0.739
COLO4_15224
PNP_UDP_1 domain-containing protein.
    
  0.739
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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