STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_03561Pectinesterase, catalytic. (73 aa)    
Predicted Functional Partners:
COLO4_20254
Glycoside hydrolase, family 28.
     
 0.734
COLO4_12934
Glycoside hydrolase, family 28.
     
 0.734
COLO4_28217
Glycoside hydrolase, family 28; Belongs to the glycosyl hydrolase 28 family.
     
 0.731
COLO4_23499
GLE1-like protein.
    
 0.700
COLO4_32536
Ribosomal protein S14.
   
   0.650
COLO4_29445
Ribosomal protein S5/S7; Belongs to the universal ribosomal protein uS7 family.
   
   0.650
COLO4_30834
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
   0.640
COLO4_10513
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
  0.567
COLO4_23165
Ubiquitin.
   
 0.563
COLO4_10901
Pectate lyase.
   
 
 0.561
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.