STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_03548PX domain-containing protein. (400 aa)    
Predicted Functional Partners:
COLO4_22965
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.912
COLO4_24928
Vacuolar protein sorting-associated protein 26.
    
 
 0.814
COLO4_16826
Vacuolar protein sorting-associated protein 26.
    
 
 0.814
COLO4_26119
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.798
COLO4_22465
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.798
COLO4_26117
Uncharacterized protein.
   
 
 0.771
COLO4_25763
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.698
COLO4_11099
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.698
COLO4_00228
Biogenesis of lysosome-related organelles complex-1, subunit 2.
    
 
 0.696
COLO4_19602
Uncharacterized protein.
    
 0.688
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.