STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_03258Binding-protein-dependent transport systems inner membrane component. (215 aa)    
Predicted Functional Partners:
COLO4_13198
BCCT transporter family.
     
 0.510
COLO4_00483
BCCT transporter family.
     
 0.510
COLO4_21300
Glycosyl transferase, family 4.
      
 0.505
COLO4_22349
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
      
 0.450
COLO4_24610
Ureohydrolase; Belongs to the arginase family.
      
 0.434
COLO4_24608
Ureohydrolase; Belongs to the arginase family.
      
 0.434
COLO4_33945
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
  
  
 0.429
COLO4_04735
Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.
      
 0.426
COLO4_32625
Cystathionine beta-synthase, core.
     
 0.421
COLO4_31498
Cystathionine beta-synthase, core.
     
 0.421
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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