Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_00483 | COLO4_03258 | A0A1R3L3S6 | A0A1R3KZA1 | BCCT transporter family. | Binding-protein-dependent transport systems inner membrane component. | 0.510 |
COLO4_03258 | COLO4_00483 | A0A1R3KZA1 | A0A1R3L3S6 | Binding-protein-dependent transport systems inner membrane component. | BCCT transporter family. | 0.510 |
COLO4_03258 | COLO4_04735 | A0A1R3KZA1 | A0A1R3KSW6 | Binding-protein-dependent transport systems inner membrane component. | Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. | 0.426 |
COLO4_03258 | COLO4_13198 | A0A1R3KZA1 | A0A1R3JXL6 | Binding-protein-dependent transport systems inner membrane component. | BCCT transporter family. | 0.510 |
COLO4_03258 | COLO4_21300 | A0A1R3KZA1 | A0A1R3IU53 | Binding-protein-dependent transport systems inner membrane component. | Glycosyl transferase, family 4. | 0.505 |
COLO4_03258 | COLO4_22349 | A0A1R3KZA1 | A0A1R3IMN7 | Binding-protein-dependent transport systems inner membrane component. | Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. | 0.450 |
COLO4_03258 | COLO4_24608 | A0A1R3KZA1 | A0A1R3I8W9 | Binding-protein-dependent transport systems inner membrane component. | Ureohydrolase; Belongs to the arginase family. | 0.434 |
COLO4_03258 | COLO4_24610 | A0A1R3KZA1 | A0A1R3I8W3 | Binding-protein-dependent transport systems inner membrane component. | Ureohydrolase; Belongs to the arginase family. | 0.434 |
COLO4_03258 | COLO4_31498 | A0A1R3KZA1 | A0A1R3H444 | Binding-protein-dependent transport systems inner membrane component. | Cystathionine beta-synthase, core. | 0.421 |
COLO4_03258 | COLO4_32625 | A0A1R3KZA1 | A0A1R3GZ18 | Binding-protein-dependent transport systems inner membrane component. | Cystathionine beta-synthase, core. | 0.421 |
COLO4_03258 | COLO4_33945 | A0A1R3KZA1 | A0A1R3GPQ2 | Binding-protein-dependent transport systems inner membrane component. | Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family. | 0.429 |
COLO4_04735 | COLO4_03258 | A0A1R3KSW6 | A0A1R3KZA1 | Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. | Binding-protein-dependent transport systems inner membrane component. | 0.426 |
COLO4_04735 | COLO4_33945 | A0A1R3KSW6 | A0A1R3GPQ2 | Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. | Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family. | 0.585 |
COLO4_13198 | COLO4_03258 | A0A1R3JXL6 | A0A1R3KZA1 | BCCT transporter family. | Binding-protein-dependent transport systems inner membrane component. | 0.510 |
COLO4_21300 | COLO4_03258 | A0A1R3IU53 | A0A1R3KZA1 | Glycosyl transferase, family 4. | Binding-protein-dependent transport systems inner membrane component. | 0.505 |
COLO4_22349 | COLO4_03258 | A0A1R3IMN7 | A0A1R3KZA1 | Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. | Binding-protein-dependent transport systems inner membrane component. | 0.450 |
COLO4_22349 | COLO4_24608 | A0A1R3IMN7 | A0A1R3I8W9 | Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. | Ureohydrolase; Belongs to the arginase family. | 0.948 |
COLO4_22349 | COLO4_24610 | A0A1R3IMN7 | A0A1R3I8W3 | Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. | Ureohydrolase; Belongs to the arginase family. | 0.948 |
COLO4_22349 | COLO4_33945 | A0A1R3IMN7 | A0A1R3GPQ2 | Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. | Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family. | 0.955 |
COLO4_24608 | COLO4_03258 | A0A1R3I8W9 | A0A1R3KZA1 | Ureohydrolase; Belongs to the arginase family. | Binding-protein-dependent transport systems inner membrane component. | 0.434 |
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