Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
COLO4_03227 | COLO4_05183 | A0A1R3KZF9 | A0A1R3KRL0 | PDZ domain-containing protein. | PCI domain-containing protein. | 0.747 |
COLO4_03227 | COLO4_07798 | A0A1R3KZF9 | A0A1R3KIK3 | PDZ domain-containing protein. | JAB1/Mov34/MPN/PAD-1. | 0.685 |
COLO4_03227 | COLO4_10274 | A0A1R3KZF9 | A0A1R3K993 | PDZ domain-containing protein. | 26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. | 0.707 |
COLO4_03227 | COLO4_16915 | A0A1R3KZF9 | A0A1R3JF96 | PDZ domain-containing protein. | PCI domain-containing protein. | 0.664 |
COLO4_03227 | COLO4_18044 | A0A1R3KZF9 | A0A1R3JAP9 | PDZ domain-containing protein. | 26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. | 0.702 |
COLO4_03227 | COLO4_22448 | A0A1R3KZF9 | A0A1R3ILW8 | PDZ domain-containing protein. | Von Willebrand factor, type A. | 0.690 |
COLO4_03227 | COLO4_22963 | A0A1R3KZF9 | A0A1R3IIQ3 | PDZ domain-containing protein. | PCI domain-containing protein. | 0.668 |
COLO4_03227 | COLO4_23410 | A0A1R3KZF9 | A0A1R3IGZ4 | PDZ domain-containing protein. | 26S proteasome complex ubiquitin receptor, subunit Rpn13. | 0.660 |
COLO4_03227 | COLO4_26144 | A0A1R3KZF9 | A0A1R3HYI3 | PDZ domain-containing protein. | Uncharacterized protein. | 0.707 |
COLO4_03227 | COLO4_27974 | A0A1R3KZF9 | A0A1R3HN70 | PDZ domain-containing protein. | F-box domain-containing protein. | 0.615 |
COLO4_05183 | COLO4_03227 | A0A1R3KRL0 | A0A1R3KZF9 | PCI domain-containing protein. | PDZ domain-containing protein. | 0.747 |
COLO4_05183 | COLO4_10274 | A0A1R3KRL0 | A0A1R3K993 | PCI domain-containing protein. | 26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. | 0.998 |
COLO4_05183 | COLO4_16915 | A0A1R3KRL0 | A0A1R3JF96 | PCI domain-containing protein. | PCI domain-containing protein. | 0.999 |
COLO4_05183 | COLO4_18044 | A0A1R3KRL0 | A0A1R3JAP9 | PCI domain-containing protein. | 26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. | 0.999 |
COLO4_05183 | COLO4_22448 | A0A1R3KRL0 | A0A1R3ILW8 | PCI domain-containing protein. | Von Willebrand factor, type A. | 0.999 |
COLO4_05183 | COLO4_22963 | A0A1R3KRL0 | A0A1R3IIQ3 | PCI domain-containing protein. | PCI domain-containing protein. | 0.999 |
COLO4_05183 | COLO4_23410 | A0A1R3KRL0 | A0A1R3IGZ4 | PCI domain-containing protein. | 26S proteasome complex ubiquitin receptor, subunit Rpn13. | 0.992 |
COLO4_05183 | COLO4_26144 | A0A1R3KRL0 | A0A1R3HYI3 | PCI domain-containing protein. | Uncharacterized protein. | 0.997 |
COLO4_05183 | COLO4_27974 | A0A1R3KRL0 | A0A1R3HN70 | PCI domain-containing protein. | F-box domain-containing protein. | 0.998 |
COLO4_07798 | COLO4_03227 | A0A1R3KIK3 | A0A1R3KZF9 | JAB1/Mov34/MPN/PAD-1. | PDZ domain-containing protein. | 0.685 |
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