STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_03227PDZ domain-containing protein. (356 aa)    
Predicted Functional Partners:
COLO4_05183
PCI domain-containing protein.
    
 0.747
COLO4_26144
Uncharacterized protein.
    
 0.707
COLO4_10274
26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.707
COLO4_18044
26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.702
COLO4_22448
Von Willebrand factor, type A.
   
 0.690
COLO4_07798
JAB1/Mov34/MPN/PAD-1.
    
 0.685
COLO4_22963
PCI domain-containing protein.
    
 0.668
COLO4_16915
PCI domain-containing protein.
    
 0.664
COLO4_23410
26S proteasome complex ubiquitin receptor, subunit Rpn13.
   
 0.660
COLO4_27974
F-box domain-containing protein.
    
 0.615
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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