STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLO4_01864Putative calcium-dependent protein kinase. (98 aa)    
Predicted Functional Partners:
COLO4_25405
Serine/threonine-protein phosphatase.
    
 0.653
COLO4_08050
Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase.
    
 0.653
COLO4_08049
Metallophos domain-containing protein.
    
 0.653
COLO4_10442
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue; Belongs to the peroxidase family.
  
   0.600
COLO4_11896
Plastocyanin-like protein.
  
 
  0.599
COLO4_34959
LisH domain-containing protein.
  
 
   0.591
COLO4_38184
Plant peroxidase; Belongs to the peroxidase family.
  
   0.587
COLO4_12002
Plastocyanin-like protein.
  
 
  0.578
COLO4_34049
Serine/threonine-protein kinase HT1-like protein.
  
 
  0.569
COLO4_10431
Heme peroxidase, plant/fungal/bacterial; Belongs to the peroxidase family.
  
   0.567
Your Current Organism:
Corchorus olitorius
NCBI taxonomy Id: 93759
Other names: C. olitorius, Corchorus olitorius L., Nalta jute, Pseudocorchorus sp. Randrianasolo 519
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