STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ34535.1KEGG: mem:Memar_1171 hypothetical protein; SPTR: Putative uncharacterized protein. (430 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.936
dnaK
Chaperone protein dnaK; Acts as a chaperone.
  
 0.933
rpoD
DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.931
EHQ34172.1
PFAM: WD domain, G-beta repeat; PEGA domain; InterPro IPR019781:IPR013229:IPR001680:IPR018391; KEGG: shc:Shell_0491 serine/threonine protein kinase with WD40 repeats; PFAM: PEGA; WD40 repeat, subgroup; SPTR: Serine/threonine protein kinase with WD40 repeats.
   
 0.926
EHQ35713.1
Hypothetical protein; PFAM: WD40-like Beta Propeller Repeat; KEGG: shc:Shell_0491 serine/threonine protein kinase with WD40 repeats; SPTR: Serine/threonine protein kinase with WD40 repeats.
   
 0.926
EHQ35328.1
PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: mpi:Mpet_0082 glycosyl transferase family 2 protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase family 2.
  
 
 0.899
EHQ34239.1
PFAM: Nitrogen regulatory protein P-II; COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002187; KEGG: mpi:Mpet_1266 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SPTR: Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.887
rpoH
DNA-directed RNA polymerase, subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
   
 0.879
EHQ34817.1
DNA-directed RNA polymerase, subunit K; PFAM: RNA polymerase Rpb6; InterPro IPR006110; KEGG: mpi:Mpet_0756 RNA polymerase Rpb6; PFAM: RNA polymerase Rpb6; SPTR: RNA polymerase Rpb6.
  
  0.872
EHQ35864.1
DNA-directed RNA polymerase, subunit B; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterPro IPR007644:IPR007642:IPR007645; KEGG: mpi:Mpet_1737 DNA-directed RNA polymerase; PFAM: RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; SPTR: DNA-directed RNA polymerase; overlaps another CDS with the same product name.
  
 0.871
Your Current Organism:
Methanoplanus limicola
NCBI taxonomy Id: 937775
Other names: M. limicola DSM 2279, Methanoplanus limicola DSM 2279, Methanoplanus limicola str. DSM 2279, Methanoplanus limicola strain DSM 2279
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