STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB19977.1Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. (508 aa)    
Predicted Functional Partners:
SDB28685.1
Amino acid adenylation domain-containing protein.
0.996
SDB28640.1
Amino acid adenylation domain-containing protein.
 0.990
SDB15144.1
Acyl transferase domain-containing protein.
 
 0.938
SDB73077.1
Formate dehydrogenase.
    
   0.834
SDB70586.1
Hypothetical protein.
     
 0.755
SDB46443.1
acyl-CoA dehydrogenase.
  
 
  0.721
SDB75097.1
Acyl-CoA dehydrogenase.
  
 
  0.657
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.650
SDB70907.1
Signal transduction histidine kinase.
    
 0.643
SDB54750.1
Signal transduction histidine kinase.
     
 0.638
Your Current Organism:
Belnapia rosea
NCBI taxonomy Id: 938405
Other names: B. rosea, Belnapia rosea Jin et al. 2012, Belnapia sp. CPCC 100156, CGMCC 1.10758, CPCC 100156, DSM 23312
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.