STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB43260.1PKHD-type hydroxylase. (227 aa)    
Predicted Functional Partners:
SDB43275.1
Catecholate siderophore receptor.
  
 0.988
SDB43210.1
Protein TonB.
 
    0.854
SDB43221.1
Biopolymer transport protein ExbD.
  
    0.840
SDB28685.1
Amino acid adenylation domain-containing protein.
   
    0.839
SDB43246.1
Uncharacterized iron-regulated membrane protein.
 
     0.834
SDB43234.1
Cell division and transport-associated protein TolQ (TC 2.C.1.2.1).
  
  
 0.815
SDB33433.1
Hypothetical protein.
    
  0.525
SDB53062.1
Hypothetical protein.
 
 
  0.508
SDB43285.1
Peptide/nickel transport system substrate-binding protein.
       0.494
SDB34599.1
Nicotinamidase-related amidase.
   
    0.493
Your Current Organism:
Belnapia rosea
NCBI taxonomy Id: 938405
Other names: B. rosea, Belnapia rosea Jin et al. 2012, Belnapia sp. CPCC 100156, CGMCC 1.10758, CPCC 100156, DSM 23312
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.