STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMU1WD40 repeat-containing protein SMU1. (513 aa)    
Predicted Functional Partners:
IK
IK cytokine.
   
 0.995
MFAP1
Microfibrillar-associated protein 1.
   
 0.965
ZMAT2
U4/U6.U5 tri-snRNP component SNU23.
    
 0.909
PRPF38A
Pre-mRNA-splicing factor 38A.
   
 0.893
PRPF6
Pre-mRNA-processing factor 6.
    
 0.878
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 
 0.837
WBP4
WW domain-binding protein 4 isoform X1.
    
 0.837
LOC107324442
DnaJ homolog subfamily A member 1-like.
   
  
 0.831
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
   
   0.814
RTRAF
RNA transcription, translation and transport factor protein.
   
  
 0.798
Your Current Organism:
Coturnix japonica
NCBI taxonomy Id: 93934
Other names: C. japonica, Coturnix coturnix Japonicus, Coturnix coturnix japanica, Coturnix coturnix japonica, Coturnix japonica japonica, Japanese quail
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.