Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARD20509.1 | ARD20510.1 | SJ2017_0160 | SJ2017_0161 | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | Anaerobic dimethyl sulfoxide reductase chain B; Pfam:pfam13247 4Fe-4S dicluster domain. | 0.877 |
ARD20509.1 | ARD20511.1 | SJ2017_0160 | SJ2017_0162 | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | 0.967 |
ARD20509.1 | ARD20513.1 | SJ2017_0160 | SJ2017_0164 | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | Cytochrome c family protein; Pfam:pfam09699 Doubled CXXCH motif (Paired_CXXCH_1). | 0.611 |
ARD20509.1 | ARD23901.1 | SJ2017_0160 | SJ2017_3655 | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | Nitrite reductase; Pfam:pfam13247 4Fe-4S dicluster domain. | 0.505 |
ARD20509.1 | ARD23998.1 | SJ2017_0160 | SJ2017_3759 | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | Hypothetical protein; Pfam:pfam13247 4Fe-4S dicluster domain. | 0.453 |
ARD20509.1 | ARD24324.1 | SJ2017_0160 | SJ2017_4096 | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | Pfam:pfam13247 4Fe-4S dicluster domain. | 0.481 |
ARD20509.1 | ARD24351.1 | SJ2017_0160 | SJ2017_4124 | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | Cytochrome c nitrite reductase Fe-S protein; Pfam:pfam13247 4Fe-4S dicluster domain. | 0.424 |
ARD20510.1 | ARD20509.1 | SJ2017_0161 | SJ2017_0160 | Anaerobic dimethyl sulfoxide reductase chain B; Pfam:pfam13247 4Fe-4S dicluster domain. | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | 0.877 |
ARD20510.1 | ARD20511.1 | SJ2017_0161 | SJ2017_0162 | Anaerobic dimethyl sulfoxide reductase chain B; Pfam:pfam13247 4Fe-4S dicluster domain. | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | 0.999 |
ARD20510.1 | ARD20513.1 | SJ2017_0161 | SJ2017_0164 | Anaerobic dimethyl sulfoxide reductase chain B; Pfam:pfam13247 4Fe-4S dicluster domain. | Cytochrome c family protein; Pfam:pfam09699 Doubled CXXCH motif (Paired_CXXCH_1). | 0.757 |
ARD20510.1 | ARD23760.1 | SJ2017_0161 | SJ2017_3511 | Anaerobic dimethyl sulfoxide reductase chain B; Pfam:pfam13247 4Fe-4S dicluster domain. | Formate dehydrogenase subunit alpha; Pfam:pfam00384 Molybdopterin oxidoreductase. | 0.759 |
ARD20511.1 | ARD20509.1 | SJ2017_0162 | SJ2017_0160 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Hypothetical protein; Pfam:pfam02613 Nitrate reductase delta subunit. | 0.967 |
ARD20511.1 | ARD20510.1 | SJ2017_0162 | SJ2017_0161 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Anaerobic dimethyl sulfoxide reductase chain B; Pfam:pfam13247 4Fe-4S dicluster domain. | 0.999 |
ARD20511.1 | ARD20513.1 | SJ2017_0162 | SJ2017_0164 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Cytochrome c family protein; Pfam:pfam09699 Doubled CXXCH motif (Paired_CXXCH_1). | 0.847 |
ARD20511.1 | ARD22515.1 | SJ2017_0162 | SJ2017_2222 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Hypothetical protein; Pfam:pfam13247 4Fe-4S dicluster domain. | 0.919 |
ARD20511.1 | ARD23104.1 | SJ2017_0162 | SJ2017_2823 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Pfam:pfam13247 4Fe-4S dicluster domain. | 0.920 |
ARD20511.1 | ARD23760.1 | SJ2017_0162 | SJ2017_3511 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Formate dehydrogenase subunit alpha; Pfam:pfam00384 Molybdopterin oxidoreductase. | 0.830 |
ARD20511.1 | ARD23901.1 | SJ2017_0162 | SJ2017_3655 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Nitrite reductase; Pfam:pfam13247 4Fe-4S dicluster domain. | 0.923 |
ARD20511.1 | ARD23998.1 | SJ2017_0162 | SJ2017_3759 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Hypothetical protein; Pfam:pfam13247 4Fe-4S dicluster domain. | 0.927 |
ARD20511.1 | ARD24324.1 | SJ2017_0162 | SJ2017_4096 | Dimethylsulfoxide reductase; Pfam:pfam01568 Molydopterin dinucleotide binding domain. | Pfam:pfam13247 4Fe-4S dicluster domain. | 0.921 |
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