STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD20560.1Signal recognition particle receptor FtsY; Pfam:pfam00448 SRP54-type protein, GTPase domain. (564 aa)    
Predicted Functional Partners:
ARD21568.1
Signal recognition particle protein; Pfam:pfam00448 SRP54-type protein, GTPase domain.
 
0.993
ARD24206.1
Pfam:pfam00344 SecY translocase.
   
 0.987
ARD23433.1
Pfam:pfam03840 Preprotein translocase SecG subunit.
   
 0.984
ARD24239.1
Pfam:pfam00584 SecE/Sec61-gamma subunits of protein translocation complex.
    
 0.981
ARD23080.1
Pfam:pfam02699 Preprotein translocase subunit.
 
  
 0.942
ARD20743.1
Protein translocase subunit SecA; Pfam:pfam07517 SecA DEAD-like domain.
     
 0.934
ARD24429.1
Membrane protein insertase YidC; Pfam:pfam14849 YidC periplasmic domain.
   
 
 0.934
ARD24374.1
Pfam:pfam02556 Preprotein translocase subunit SecB.
     
 0.928
ARD20537.1
Heme A synthase; Pfam:pfam02628 Cytochrome oxidase assembly protein.
 
  
 0.904
ARD24235.1
Pfam:pfam00466 Ribosomal protein L10.
   
 
 0.876
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.