STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD20571.1Pfam:pfam11075 Protein of unknown function VcgC/VcgE (DUF2780). (176 aa)    
Predicted Functional Partners:
ARD22541.1
Hypothetical protein.
  
     0.692
ARD21844.1
Pfam:pfam11949 Protein of unknown function (DUF3466).
  
     0.684
ARD23252.1
DNA helicase; Pfam:pfam13538 UvrD-like helicase C-terminal domain.
  
     0.660
ARD23805.1
Pfam:pfam08668 HDOD domain.
  
     0.631
ARD21635.1
Pfam:pfam11101 Protein of unknown function (DUF2884).
  
     0.619
ARD20573.1
Hypothetical protein; Pfam:pfam13643 Domain of unknown function (DUF4145).
 
     0.605
ARD20944.1
TetR family transcriptional regulator.
  
     0.599
ARD20962.1
Pfam:pfam00005 ABC transporter.
  
     0.590
ARD20773.1
Hypothetical protein.
  
     0.578
ARD20570.1
Tellurium resistance terB-like protein subgroup 2; Pfam:pfam05099 Tellurite resistance protein TerB.
 
     0.570
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.