STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD20645.1Flagellar regulatory protein FleQ; Pfam:pfam00158 Sigma-54 interaction domain. (431 aa)    
Predicted Functional Partners:
ARD20646.1
Flagellar motor protein MotB; Pfam:pfam00691 OmpA family.
  
    0.962
ARD20648.1
Flagellar motor switch protein FliN; Pfam:pfam01052 Surface presentation of antigens (SPOA).
  
  
 0.946
ARD23219.1
Flagellar sensor histidine kinase FleS; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 0.943
ARD20644.1
Pfam:pfam02049 Flagellar hook-basal body complex protein FliE.
  
  
 0.922
ARD23218.1
Flagellar regulatory protein FleQ; Pfam:pfam00158 Sigma-54 interaction domain.
  
  
 
0.910
ARD23885.1
RNA polymerase sigma-54 factor; Pfam:pfam04552 Sigma-54, DNA binding domain.
 
   
 0.787
ARD23216.1
Pfam:pfam08345 Flagellar M-ring protein C-terminal.
  
  
 0.674
ARD20598.1
Nitrogen regulation protein NR(II); Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.673
ARD23200.1
Cobyrinic acid a,c-diamide synthase; Pfam:pfam01656 CobQ/CobB/MinD/ParA nucleotide binding domain.
  
 
 0.642
ARD23196.1
Chemotaxis protein CheA; Pfam:pfam01584 CheW-like domain.
  
 
 0.637
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.