STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD20663.1Hypothetical protein. (376 aa)    
Predicted Functional Partners:
ARD21079.1
Pfam:pfam00171 Aldehyde dehydrogenase family.
     
  0.900
ARD21642.1
Pfam:pfam14748 Pyrroline-5-carboxylate reductase dimerization.
     
  0.900
ARD24228.1
Pfam:pfam00009 Elongation factor Tu GTP binding domain.
   
   0.768
ARD24240.1
Pfam:pfam00009 Elongation factor Tu GTP binding domain.
   
   0.768
ARD20381.1
Oxygen-dependent coproporphyrinogen-III oxidase; Pfam:pfam01218 Coproporphyrinogen III oxidase.
   
  
 0.658
ARD23377.1
Pfam:pfam06418 CTP synthase N-terminus.
   
    0.579
ARD21406.1
Sterol desaturase; Pfam:pfam04116 Fatty acid hydroxylase superfamily.
   
  
 0.537
ARD23767.1
Pfam:pfam04116 Fatty acid hydroxylase superfamily.
   
  
 0.537
ARD20662.1
Hypothetical protein.
       0.522
ARD23295.1
Pfam:pfam00958 GMP synthase C terminal domain.
   
    0.463
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.