STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD20672.1Hypothetical protein; Pfam:pfam13279 Thioesterase-like superfamily. (162 aa)    
Predicted Functional Partners:
ARD20678.1
Acyl carrier protein; Pfam:pfam00550 Phosphopantetheine attachment site.
 
 
 0.973
ARD20679.1
Acyl carrier protein.
 
 
 0.965
ARD20674.1
Acyltransferase; Pfam:pfam00535 Glycosyl transferase family 2.
 
    0.954
ARD20670.1
Hypothetical protein.
 
    0.953
ARD20671.1
Membrane protein.
 
    0.953
ARD20675.1
Thioester dehydrase.
 
   
 0.953
ARD20676.1
AMP-dependent synthetase/ligase; Pfam:pfam00501 AMP-binding enzyme.
 
    0.952
ARD20677.1
Hypothetical protein.
 
     0.952
ARD20669.1
FAD-dependent oxidoreductase; Pfam:pfam01494 FAD binding domain.
 
     0.948
ARD20680.1
Pfam:pfam01553 Acyltransferase.
 
     0.933
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.