STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD20762.1Patatin; Pfam:pfam01734 Patatin-like phospholipase. (737 aa)    
Predicted Functional Partners:
ARD23605.1
Pfam:pfam13525 Outer membrane lipoprotein.
  
 0.871
ARD22139.1
Outer membrane protein assembly factor BamC; Pfam:pfam06804 NlpB/DapX lipoprotein.
   
 0.849
ARD20936.1
Hypothetical protein.
  
 0.803
ARD23306.1
Outer membrane protein assembly factor BamB; Pfam:pfam13360 PQQ-like domain.
  
 0.803
ARD23138.1
Hypothetical protein.
  
 
 
 0.800
ARD23328.1
Cell envelope protein SmpA; Pfam:pfam04355 SmpA / OmlA family.
    
 0.708
ARD23750.1
Hypothetical protein.
    
 0.708
ARD21710.1
Pfam:pfam11399 Protein of unknown function (DUF3192).
    
 0.660
ARD23159.1
Pfam:pfam11399 Protein of unknown function (DUF3192).
    
 0.660
ARD21732.1
RIP metalloprotease RseP; Pfam:pfam02163 Peptidase family M50.
  
  
 0.625
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.