STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD20888.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
ARD20890.1
Pfam:pfam00126 Bacterial regulatory helix-turn-helix protein, lysR family.
 
     0.525
ARD20887.1
Pfam:pfam00072 Response regulator receiver domain.
       0.505
ARD20889.1
Hypothetical protein.
       0.500
ARD22955.1
Hypothetical protein.
  
     0.491
ARD20882.1
Chitin-binding protein; Pfam:pfam03067 Chitin binding domain.
  
     0.488
ARD23405.1
Hypothetical protein; Pfam:pfam02036 SCP-2 sterol transfer family.
  
     0.479
ARD21586.1
Pfam:pfam01814 Hemerythrin HHE cation binding domain.
  
     0.435
ARD24100.1
Membrane protein.
  
     0.428
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.