STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD20964.1Pfam:pfam11783 Cytochrome c bacterial. (467 aa)    
Predicted Functional Partners:
ARD21827.1
Sulfate transporter.
  
 
  0.897
ARD22055.1
Sodium-independent anion transporter; Pfam:pfam00916 Sulfate transporter family.
    
  0.883
ARD20965.1
Pfam:pfam11853 Protein of unknown function (DUF3373).
 
    0.808
ARD20539.1
Cytochrome C oxidase biogenesis protein; Pfam:pfam02104 SURF1 family.
    
   0.755
ARD24206.1
Pfam:pfam00344 SecY translocase.
    
   0.755
ARD20966.1
Pfam:pfam13442 Cytochrome C oxidase, cbb3-type, subunit III.
 
     0.754
ARD20406.1
3-deoxy-D-manno-octulosonic acid kinase; Pfam:pfam06293 Lipopolysaccharide kinase (Kdo/WaaP) family.
   
 0.740
ARD24073.1
Hypothetical protein; Pfam:pfam12796 Ankyrin repeats (3 copies).
   
 0.720
ARD21070.1
Peptidase S8; Pfam:pfam00082 Subtilase family.
  
 
 0.717
ARD21179.1
Peptidase S8; Pfam:pfam00082 Subtilase family.
  
 
 0.717
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.