STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21231.1Hypothetical protein; Pfam:pfam01522 Polysaccharide deacetylase. (304 aa)    
Predicted Functional Partners:
ARD21198.1
Hypothetical protein.
  
     0.680
ARD23712.1
Hypothetical protein.
  
     0.619
ARD23721.1
Pfam:pfam00759 Glycosyl hydrolase family 9.
 
   
 0.614
ARD21615.1
Beta-N-acetylhexosaminidase; Pfam:pfam00728 Glycosyl hydrolase family 20, catalytic domain.
 
   
 0.609
ARD21770.1
Hypothetical protein.
  
     0.598
ARD20910.1
FG-GAP repeat protein.
  
     0.581
ARD22320.1
Beta-xylanase; Pfam:pfam00331 Glycosyl hydrolase family 10.
 
   
 0.525
ARD21620.1
Glucose/galactose MFS transporter; Pfam:pfam07690 Major Facilitator Superfamily.
  
    0.515
ARD21322.1
Hypothetical protein; Pfam:pfam00590 Tetrapyrrole (Corrin/Porphyrin) Methylases.
  
     0.497
ARD22311.1
alpha-N-arabinofuranosidase; Pfam:pfam04616 Glycosyl hydrolases family 43.
  
   
 0.488
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.