STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARD21237.1Hypothetical protein. (560 aa)    
Predicted Functional Partners:
ARD22501.1
DNA translocase FtsK; Pfam:pfam01580 FtsK/SpoIIIE family.
   
 
 0.821
ARD24125.1
Outer membrane protein assembly factor BamA; Pfam:pfam01103 Surface antigen.
 
     0.774
ARD20828.1
ADP-heptose--lipooligosaccharide heptosyltransferase III.
  
     0.758
ARD21238.1
Phospholipase; Pfam:pfam01734 Patatin-like phospholipase.
  
     0.751
ARD21814.1
Pfam:pfam13265 Protein of unknown function (DUF4056).
 
     0.751
ARD24091.1
Peptidase S8; Pfam:pfam00082 Subtilase family.
 
     0.732
ARD23744.1
Glyceraldehyde 3-phosphate dehydrogenase.
 
     0.724
ARD21312.1
ABC transporter substrate-binding protein; Pfam:pfam00375 Sodium:dicarboxylate symporter family.
  
     0.683
ARD24135.1
Hemolysin D.
  
     0.679
ARD21444.1
GTPase; Pfam:pfam11742 Protein of unknown function (DUF3302).
  
     0.678
Your Current Organism:
Shewanella japonica
NCBI taxonomy Id: 93973
Other names: ATCC BAA-316, CIP 106860, CIP 107849 [[Shewanella pacifica]], DSM 15445 [[Shewanella pacifica]], JCM 21433, KCTC 22435, KMM 3299, KMM 3597 [[Shewanella pacifica]], LMG 19691, LMG:19691, NBRC 103171, S. japonica, Shewanella japonica Ivanova et al. 2001 emend. Thorell et al. 2019, Shewanella pacifica, Shewanella pacifica Ivanova et al. 2004, Shewanella sp. KMM3299, strain R10SW1 [[Shewanella pacifica]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.